 |
PDBsum entry 6yf4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 6yf4 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
6yf4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 pores,
coloured by radius |
|
11 pores,
coloured by radius
|
11 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.21 |
1.21 |
31.2 |
-1.87 |
-0.82 |
13.1 |
89 |
|
2 |
2 |
6 |
0 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.54 |
1.72 |
60.4 |
-1.97 |
-0.49 |
19.0 |
80 |
8 |
4 |
6 |
3 |
3 |
0 |
0 |
|
|
3 |
 |
1.93 |
1.94 |
76.4 |
-1.45 |
-0.55 |
14.5 |
84 |
9 |
7 |
7 |
6 |
0 |
0 |
0 |
|
|
4 |
 |
1.53 |
1.75 |
85.6 |
-2.04 |
-0.52 |
21.1 |
81 |
9 |
6 |
8 |
4 |
3 |
0 |
0 |
|
|
5 |
 |
1.82 |
2.32 |
112.2 |
-2.31 |
-0.58 |
27.3 |
84 |
10 |
8 |
6 |
3 |
1 |
0 |
0 |
|
|
6 |
 |
1.96 |
2.33 |
117.3 |
-1.87 |
-0.57 |
21.1 |
85 |
11 |
12 |
10 |
5 |
0 |
0 |
0 |
|
|
7 |
 |
1.94 |
2.96 |
135.2 |
-1.94 |
-0.58 |
24.7 |
84 |
11 |
13 |
8 |
5 |
0 |
1 |
0 |
|
|
8 |
 |
1.82 |
3.12 |
132.9 |
-2.23 |
-0.66 |
23.7 |
84 |
12 |
13 |
9 |
4 |
0 |
0 |
0 |
|
|
9 |
 |
1.56 |
1.75 |
136.2 |
-2.76 |
-0.59 |
28.9 |
81 |
16 |
13 |
9 |
1 |
3 |
0 |
0 |
|
|
10 |
 |
1.59 |
1.70 |
139.4 |
-2.39 |
-0.53 |
26.8 |
82 |
15 |
14 |
11 |
2 |
3 |
1 |
0 |
|
 |
11 |
 |
1.86 |
2.33 |
186.6 |
-2.33 |
-0.64 |
25.2 |
85 |
12 |
15 |
12 |
3 |
0 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program