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PDBsum entry 6y9h

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6y9h calculated with MOLE 2.0 PDB id
6y9h
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.34 19.9 -1.29 -0.78 16.1 76 1 2 1 0 1 1 0  DPN 1 C OGZ 3 C
2 1.29 1.39 20.8 -1.72 -0.76 21.4 83 4 3 1 0 2 1 0  NA 302 H
3 1.28 1.42 30.4 -1.01 -0.54 15.0 83 2 3 3 2 2 0 0  OGZ 3 C
4 1.40 1.65 33.8 -0.29 0.21 19.4 76 3 1 0 6 2 1 1  DMS 303 H
5 1.36 1.45 22.6 -0.10 0.06 9.4 80 3 0 1 6 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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