PDBsum entry 6y9d Go to PDB code:  Pore analysis for: 6y9d calculated with MOLE 2.0 PDB id 6y9d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.52 2.56 26.7 -1.87 -0.80 24.7 79 1 6 2 2 0 0 0   2 2.27 2.26 51.1 -2.22 -0.70 25.1 86 4 5 6 2 0 1 0   3 2.25 2.25 57.6 -2.29 -0.76 24.8 84 3 5 8 2 0 1 0   4 2.16 2.39 63.3 -2.52 -0.77 23.5 88 3 4 7 2 0 1 0   5 3.08 4.85 78.5 -2.21 -0.73 25.2 85 5 8 6 3 0 0 0   6 3.01 4.83 117.3 -2.00 -0.63 26.6 86 8 9 7 4 0 0 0   7 1.39 1.81 40.4 -2.37 -0.81 32.6 77 2 6 2 2 0 0 0   8 1.42 1.59 53.9 -2.18 -0.69 29.2 78 4 7 5 3 1 1 0   9 3.73 3.93 63.9 -1.98 -0.48 32.0 81 7 8 3 4 0 1 0   10 1.14 1.14 49.6 -2.06 -0.48 27.4 82 5 3 3 2 0 1 0   11 2.79 3.79 52.0 -2.28 -0.70 26.9 84 7 4 5 1 0 1 0   12 1.67 1.83 54.6 -1.90 -0.57 22.3 78 6 4 4 2 1 0 0   13 2.78 3.79 55.2 -2.10 -0.75 22.6 88 5 4 6 1 0 1 0   14 1.67 1.84 57.9 -1.74 -0.61 18.6 83 4 4 5 2 1 0 0   15 1.13 1.14 64.4 -1.37 -0.36 19.4 77 6 4 2 3 1 0 0   16 1.42 1.46 64.8 -2.10 -0.56 29.9 81 7 5 3 2 0 0 0   17 1.39 1.44 68.1 -1.88 -0.58 26.2 85 5 5 4 2 0 0 0   18 1.67 1.96 37.1 -1.00 -0.07 22.4 76 5 2 1 3 2 1 1   19 2.23 3.78 28.8 1.31 0.49 4.5 75 1 2 2 4 3 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.