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PDBsum entry 6y9c

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Tunnel analysis for: 6y9c calculated with MOLE 2.0 PDB id
6y9c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.47 27.2 -0.19 0.11 13.4 84 3 1 2 7 3 0 1  FE 401 A 152 402 A SCN 403 A
2 1.27 1.45 21.0 0.12 -0.12 2.2 68 0 0 2 1 2 3 0  
3 1.27 1.44 21.4 0.21 -0.17 2.3 68 0 0 2 2 2 2 0  
4 1.59 1.96 15.7 -0.39 0.43 12.3 71 1 2 0 2 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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