PDBsum entry 6y6d Go to PDB code:  Pore analysis for: 6y6d calculated with MOLE 2.0 PDB id 6y6d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.22 2.39 29.2 -1.21 -0.40 16.4 83 2 3 3 2 1 1 0   2 2.20 3.05 36.8 -1.30 -0.71 8.3 88 1 2 5 3 0 1 0   3 2.91 4.19 43.1 -2.07 -0.47 27.6 85 3 3 1 2 0 1 0   4 1.21 2.18 45.8 -0.65 -0.54 8.4 89 2 3 6 3 1 0 1   5 2.13 3.51 45.7 -2.51 -0.61 29.0 81 5 9 3 0 1 2 0   6 2.31 2.38 47.0 -2.23 -0.68 23.6 85 5 8 5 0 1 1 0   7 1.38 3.10 58.2 -1.73 -0.51 20.7 82 3 4 3 2 1 2 0   8 1.28 1.34 58.9 -1.85 -0.37 33.2 79 7 7 0 5 1 0 0   9 1.32 1.39 150.0 -1.97 -0.51 20.1 84 12 8 12 4 3 3 1   10 1.40 1.78 184.5 -1.25 -0.43 14.1 87 8 6 13 10 3 3 0  GOL 505 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.