spacer
spacer

PDBsum entry 6y2h

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6y2h calculated with MOLE 2.0 PDB id
6y2h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 2.26 92.5 -0.94 -0.15 19.8 81 10 7 5 7 5 1 0  
2 1.80 2.82 95.7 -1.55 -0.50 23.2 84 5 10 3 5 2 0 0  
3 1.79 2.27 104.6 -1.55 -0.49 23.8 80 8 10 1 4 2 2 0  
4 1.64 2.73 29.8 -2.03 -0.56 29.2 79 7 5 1 3 1 0 0  
5 1.83 2.82 31.1 -1.44 -0.43 20.8 81 4 4 2 5 2 0 0  
6 1.73 1.88 53.2 -2.10 -0.53 26.9 82 9 8 3 2 2 0 0  SCN 303 B
7 1.93 1.98 75.0 -1.27 -0.25 20.9 83 8 7 5 8 5 0 0  SCN 303 A
8 1.53 1.58 80.9 -1.31 -0.35 23.4 82 10 7 4 7 3 1 0  SCN 304 B
9 1.71 1.89 86.8 -1.69 -0.35 23.6 82 12 10 7 7 5 0 0  SCN 303 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer