PDBsum entry 6y1e Go to PDB code:  Tunnel analysis for: 6y1e calculated with MOLE 2.0 PDB id 6y1e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.61 1.73 27.0 -1.27 -0.26 17.2 83 4 1 3 5 1 0 0  O7Z 303 A 2 1.20 1.65 21.1 -0.26 0.62 11.3 77 3 0 2 3 3 0 0  GSH 301 D 3 1.22 1.56 21.7 0.28 0.51 13.3 81 3 1 1 6 2 0 0   4 1.18 1.27 16.2 1.28 0.38 3.9 76 1 1 2 6 1 0 0   5 1.34 1.48 17.6 -0.29 0.13 17.6 71 1 2 0 3 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.