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PDBsum entry 6wc5

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 6wc5 calculated with MOLE 2.0 PDB id
6wc5
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.27 1.38 55.0 -1.07 -0.35 17.6 73 6 1 1 2 2 0 0  DT 7 E DT 8 E DT 9 E DC 10 E DA 15 E DA 16 E DT
17 E DT 4 F DT 9 F DA 10 F
2 2.41 2.98 89.6 -2.10 -0.55 25.9 82 9 7 2 1 4 0 0  DA 16 E DT 17 E DC 1 F DA 2 F DT 4 F DT 7 G DT 8
G DT 9 G DC 10 G DT 11 G DT 8 H DT 9 H
3 2.00 1.99 92.2 -1.43 -0.42 13.6 77 5 0 3 3 3 0 0  DT 7 G DT 8 G DT 9 G DC 10 G DT 11 G DT 12 G DA
13 G DT 8 H DT 9 H DG 12 H DA 13 H
4 1.92 1.91 93.9 -1.97 -0.52 25.3 85 10 7 3 3 2 0 0  DG 19 E DT 20 E DG 21 E DC 1 F DT 7 G DT 8 G DT 9
G DC 10 G DT 11 G DT 8 H DT 9 H
5 1.99 1.98 95.7 -2.19 -0.52 30.1 83 11 8 2 4 2 0 0  DG 19 E DT 20 E DG 21 E DC 1 F DA 5 G DC 6 G DT
12 G DA 13 G DG 12 H DA 13 H
6 2.22 2.46 102.7 -2.07 -0.54 26.8 83 11 9 2 2 4 0 0  DT 7 G DT 8 G DT 9 G DC 10 G DT 11 G DT 8 H DT 9 H
7 2.41 2.39 120.9 -1.88 -0.52 23.8 80 12 7 4 4 3 0 0  DA 15 E DA 16 E DT 17 E DC 1 F DA 2 F DT 4 F DA 5
G DC 6 G DT 12 G DA 13 G DG 12 H DA 13 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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