PDBsum entry 6vqh

Pore analysis for: 6vqh calculated with

MOLE 2.0

PDB id

6vqh

Pores calculated on whole structure

Pores calculated excluding ligands

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14 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.50

1.55

40.9

0.13

-0.08

7.8

85

3

1

4

7

2

1

0

2

2.41

2.59

52.1

-0.27

-0.17

10.3

81

6

1

3

8

3

0

0

3

2.35

3.31

69.8

0.45

0.10

9.7

79

5

2

4

13

5

0

1

4

1.82

2.06

79.0

-1.80

-0.59

23.2

84

4

9

4

4

2

1

0

5

4.52

5.21

80.8

0.13

0.49

14.1

72

6

2

1

15

13

1

2

6

2.10

2.50

83.8

0.90

0.46

6.0

76

3

3

5

15

11

2

1

7

1.91

2.87

124.0

-1.30

-0.30

13.9

77

5

6

7

4

7

3

0

8

1.16

1.32

128.1

0.38

0.37

8.9

75

4

4

3

24

13

2

2

9

2.03

2.58

137.2

-0.94

-0.33

11.5

79

4

7

13

9

7

4

0

10

1.26

1.42

143.6

1.53

0.72

4.2

71

1

3

3

27

23

1

2

11

1.26

1.26

192.7

0.20

0.16

10.2

76

8

5

5

25

14

2

2

12

1.39

2.42

195.1

0.68

0.53

8.4

73

7

5

1

26

17

3

2

13

1.29

1.28

240.5

0.63

0.26

8.7

77

8

6

5

35

18

2

2

14

1.17

1.14

260.6

-0.20

0.05

10.1

76

9

9

14

32

23

4

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.