PDBsum entry 6v5t

Tunnel analysis for: 6v5t calculated with

MOLE 2.0

PDB id

6v5t

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

11 tunnels, coloured by tunnel radius

11 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.28

1.64

22.4

0.42

-0.06

6.7

81

0

3

2

4

2

0

0

FTR 215 E

2

1.27

1.64

23.0

0.62

0.01

5.8

85

2

2

2

4

1

0

0

FTR 215 E

3

1.28

1.64

25.6

-0.04

-0.12

8.8

84

1

2

2

4

2

0

0

FTR 60 E i:D FTR 148 E FTR 215 E GOL 301 E

4

1.35

1.42

19.0

0.47

-0.07

10.6

82

1

3

1

6

0

0

0

FTR 51 E

5

1.35

1.42

22.0

0.66

-0.02

7.4

83

1

1

1

6

0

0

0

FTR 51 E

6

1.23

1.30

33.7

0.20

-0.03

11.8

77

3

3

1

11

1

2

0

FTR 29 E FTR 207 E

7

1.10

1.44

16.3

-0.44

-0.05

15.4

77

1

0

0

2

1

0

0

FTR 141 E

8

1.06

1.46

19.5

-0.17

-0.01

15.3

79

1

1

0

2

1

0

0

FTR 141 E

9

1.29

1.29

20.7

-0.28

-0.21

11.7

82

3

1

1

2

1

0

0

10

1.20

1.40

27.2

-0.28

-0.18

11.3

81

4

1

1

4

1

0

0

FTR 141 E

11

1.21

1.42

28.4

-0.39

-0.23

11.5

81

3

2

1

4

1

0

0

FTR 141 E

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.