PDBsum entry 6v2c

Pore analysis for: 6v2c calculated with

MOLE 2.0

PDB id

6v2c

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

11 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

1.16

47.4

-1.30

-0.35

14.0

86

3

2

4

5

2

2

0

AEI 12 C

2

1.32

1.32

47.8

-1.31

-0.39

14.3

89

3

2

4

4

2

1

0

AEI 12 D

3

1.19

1.19

51.8

-1.16

-0.41

12.8

86

3

2

4

5

2

1

0

AEI 12 B

4

1.66

2.53

68.6

-1.98

-0.44

19.8

90

8

5

6

2

2

0

0

5

1.66

2.32

69.4

-2.14

-0.43

22.5

90

8

5

6

2

2

0

0

6

1.65

2.41

70.7

-2.07

-0.43

21.2

90

8

5

6

2

2

0

0

7

1.87

2.08

73.4

-2.00

-0.41

20.6

91

8

6

6

2

2

0

0

8

1.92

2.08

72.3

-1.96

-0.42

19.9

91

7

6

6

2

2

0

0

9

1.86

1.94

73.6

-2.02

-0.41

20.5

91

8

6

6

2

2

0

0

10

1.19

1.19

89.2

-1.62

-0.42

16.3

89

7

5

6

5

3

2

0

AEI 12 C

11

1.10

1.10

89.6

-1.53

-0.43

14.8

89

7

5

6

5

3

1

0

AEI 12 B

12

1.19

1.19

90.5

-1.65

-0.42

16.1

89

8

5

6

5

3

2

0

AEI 12 C

13

1.65

1.79

34.9

-0.76

-0.64

8.5

89

1

1

0

2

0

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.