spacer
spacer

PDBsum entry 6ujh

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6ujh calculated with MOLE 2.0 PDB id
6ujh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.82 2.01 24.5 -2.21 -0.39 22.4 81 5 1 3 1 2 1 0  SO4 403 A
2 1.71 1.78 26.2 0.33 0.16 9.1 79 2 3 3 5 5 0 1  
3 1.82 2.01 32.5 -1.73 -0.19 20.8 73 6 0 1 1 3 3 0  SO4 403 A
4 1.82 2.01 41.3 -1.85 -0.17 20.5 69 6 2 3 2 6 3 0  QBS 401 A SO4 403 A
5 1.23 1.62 17.9 1.12 0.57 7.7 76 1 0 1 3 1 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer