PDBsum entry 6u1n

Tunnel analysis for: 6u1n calculated with

MOLE 2.0

PDB id

6u1n

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

2.07

32.3

2.26

0.75

3.8

77

2

2

1

10

1

1

0

2

1.20

2.08

34.1

2.05

0.65

3.3

75

2

1

1

10

2

1

0

3

1.25

1.52

17.3

2.53

0.92

3.0

82

1

1

0

8

1

0

0

4

1.15

2.81

21.1

3.35

1.08

1.8

79

1

0

0

9

3

0

0

5

1.17

2.76

23.6

3.50

1.04

1.6

79

1

0

0

10

2

0

0

6

1.24

1.52

25.8

2.50

0.96

2.2

82

1

1

1

9

2

0

0

7

1.30

1.47

27.2

1.79

0.51

4.9

83

2

0

2

7

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.