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PDBsum entry 6tqk

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Structural protein PDB id
6tqk
Contents
Protein chains
296 a.a.
144 a.a.
153 a.a.
Ligands
NAG-NAG ×2
NAG-NAG-BMA-MAN-
NAG-GAL-NAG-MAN
×2
NAG ×2

References listed in PDB file
Key reference
Title Cryo-Em structure of native human uromodulin, A zona pellucida module polymer.
Authors A.Stsiapanava, C.Xu, M.Brunati, S.Zamora-Caballero, C.Schaeffer, M.Bokhove, L.Han, H.Hebert, M.Carroni, S.Yasumasu, L.Rampoldi, B.Wu, L.Jovine.
Ref. EMBO J, 2020, 39, e106807. [DOI no: 10.15252/embj.2020106807]
PubMed id 33196145
Abstract
Assembly of extracellular filaments and matrices mediating fundamental biological processes such as morphogenesis, hearing, fertilization, and antibacterial defense is driven by a ubiquitous polymerization module known as zona pellucida (ZP) "domain". Despite the conservation of this element from hydra to humans, no detailed information is available on the filamentous conformation of any ZP module protein. Here, we report a cryo-electron microscopy study of uromodulin (UMOD)/Tamm-Horsfall protein, the most abundant protein in human urine and an archetypal ZP module-containing molecule, in its mature homopolymeric state. UMOD forms a one-start helix with an unprecedented 180-degree twist between subunits enfolded by interdomain linkers that have completely reorganized as a result of propeptide dissociation. Lateral interaction between filaments in the urine generates sheets exposing a checkerboard of binding sites to capture uropathogenic bacteria, and UMOD-based models of heteromeric vertebrate egg coat filaments identify a common sperm-binding region at the interface between subunits.
Secondary reference #1
Title Characterization and separation of an inhibitor of viral hemagglutination present in urine.
Authors I.Tamm, F.L.Horsfall.
Ref. Proc Soc Exp Biol Med, 1950, 74, 106-108.
PubMed id 15430405
Abstract
Secondary reference #2
Title Etude chimique et ultrastructurale de la glycoprotein tamm et horsfall ou uromucoide.
Authors E.Delain, J.P.Thiery, D.Coulard, A.Joliviene, L.Hartman.
Ref. biol cellulaire, 1980, 39, 31.
Secondary reference #3
Title Identification of human uromodulin as the tamm-Horsfall urinary glycoprotein.
Authors D.Pennica, W.J.Kohr, W.J.Kuang, D.Glaister, B.B.Aggarwal, E.Y.Chen, D.V.Goeddel.
Ref. Science, 1987, 236, 83-88. [DOI no: 10.1126/science.3453112]
PubMed id 3453112
Abstract
Secondary reference #4
Title The zp domain is a conserved module for polymerization of extracellular proteins.
Authors L.Jovine, H.Qi, Z.Williams, E.Litscher, P.M.Wassarman.
Ref. Nat Cell Biol, 2002, 4, 457-461.
PubMed id 12021773
Abstract
Secondary reference #5
Title Tamm-Horsfall glycoprotein: biology and clinical relevance.
Authors F.Serafini-Cessi, N.Malagolini, D.Cavallone.
Ref. Am J Kidney Dis, 2003, 42, 658-676.
PubMed id 14520616
Abstract
Secondary reference #6
Title A duplicated motif controls assembly of zona pellucida domain proteins.
Authors L.Jovine, H.Qi, Z.Williams, E.S.Litscher, P.M.Wassarman.
Ref. Proc Natl Acad Sci U S A, 2004, 101, 5922-5927.
PubMed id 15079052
Abstract
Secondary reference #7
Title Zona pellucida domain proteins.
Authors L.Jovine, C.C.Darie, E.S.Litscher, P.M.Wassarman.
Ref. Annu Rev Biochem, 2005, 74, 83.
PubMed id 15952882
Abstract
Secondary reference #8
Title Analysis of uromodulin polymerization provides new insights into the mechanisms regulating zp domain-Mediated protein assembly.
Authors C.Schaeffer, S.Santambrogio, S.Perucca, G.Casari, L.Rampoldi.
Ref. Mol Biol Cell, 2009, 20, 589-599. [DOI no: 10.1091/mbc.e08-08-0876]
PubMed id 19005207
Abstract
Secondary reference #9
Title Insights into egg coat assembly and egg-Sperm interaction from the X-Ray structure of full-Length zp3.
Authors L.Han, M.Monné, H.Okumura, T.Schwend, A.L.Cherry, D.Flot, T.Matsuda, L.Jovine.
Ref. Cell, 2010, 143, 404-415.
PubMed id 20970175
Abstract
Secondary reference #10
Title The rediscovery of uromodulin (tamm-Horsfall protein): from tubulointerstitial nephropathy to chronic kidney disease.
Authors L.Rampoldi, F.Scolari, A.Amoroso, G.Ghiggeri, O.Devuyst.
Ref. Kidney Int, 2011, 80, 338-347.
PubMed id 21654721
Abstract
Secondary reference #11
Title The serine protease hepsin mediates urinary secretion and polymerisation of zona pellucida domain protein uromodulin.
Authors M.Brunati, S.Perucca, L.Han, A.Cattaneo, F.Consolato, A.Andolfo, C.Schaeffer, E.Olinger, J.Peng, S.Santambrogio, R.Perrier, S.Li, M.Bokhove, A.Bachi, E.Hummler, O.Devuyst, Q.Wu, L.Jovine, L.Rampoldi.
Ref. Elife, 2015, 4, e08887. [DOI no: 10.7554/eLife.08887]
PubMed id 26673890
Abstract
Secondary reference #12
Title A structured interdomain linker directs self-Polymerization of human uromodulin.
Authors M.Bokhove, K.Nishimura, M.Brunati, L.Han, D.De sanctis, L.Rampoldi, L.Jovine.
Ref. Proc Natl Acad Sci U S A, 2016, 113, 1552-1557. [DOI no: 10.1073/pnas.1519803113]
PubMed id 26811476
Abstract
Secondary reference #13
Title Structure of zona pellucida module proteins.
Authors M.Bokhove, L.Jovine.
Ref. Curr Top Dev Biol, 2018, 130, 413-442. [DOI no: 10.1016/bs.ctdb.2018.02.007]
PubMed id 29853186
Abstract
Secondary reference #14
Title Cryo-Em structure of native human uromodulin, A zona pellucida module polymer.
Authors A.Stsiapanava, C.Xu, M.Brunati, S.Zamora-Caballero, C.Schl.Han, M.Carroni, S.Yasumasu, L.Rampoldi, B.Wu, L.Jovine.
Ref. biorxiv ...
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