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PDBsum entry 6tot

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Pore analysis for: 6tot calculated with MOLE 2.0 PDB id
6tot
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 1.31 48.2 0.42 0.23 6.8 85 2 2 4 13 3 1 1  PGW 410 A NRK 401 B
2 3.27 4.65 58.1 2.38 0.76 3.6 79 1 1 2 20 4 0 0  SOG 406 A SOG 408 A PGW 409 A SOG 408 B
3 1.19 1.27 59.9 0.49 0.19 7.9 84 2 3 4 16 3 2 1  NRK 401 A PGW 409 A PGW 410 A
4 1.32 1.32 63.3 0.09 -0.05 9.8 84 6 2 6 13 4 1 0  PGW 409 A PGW 410 A NRK 401 B SOG 407 B
5 1.17 1.26 63.3 0.40 0.18 8.4 85 2 4 4 16 4 1 1  NRK 401 A SOG 408 A PGW 409 A
6 1.32 1.37 65.9 0.99 0.27 5.9 84 4 2 6 22 4 2 0  SOG 408 A PGW 409 A PGW 410 A NRK 401 B
7 1.20 1.27 67.2 0.21 0.02 9.5 84 5 3 6 14 4 1 0  NRK 401 A PGW 409 A SOG 407 B
8 1.18 1.26 79.4 0.19 0.06 10.1 87 5 5 8 22 4 2 0  NRK 401 A PGW 409 A PGW 410 A NRK 401 B
9 1.32 1.31 93.3 0.96 0.31 6.5 82 3 3 4 23 4 2 1  SOG 408 A PGW 409 A PGW 410 A NRK 401 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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