spacer
spacer

PDBsum entry 6tmo

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) links
Immune system PDB id
6tmo
Contents
Protein chains
276 a.a.
100 a.a.
197 a.a.
244 a.a.
Ligands
GLU-ALA-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
GOL ×5
EDO ×7
SO4 ×5
TAM ×3
Waters ×388
procheck   Generate full PROCHECK analyses

PROCHECK summary for 6tmo

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          655       90.5%          
Additional allowed regions [a,b,l,p]         62        8.6%          
Generously allowed regions [~a,~b,~l,~p]      4        0.6%          
Disallowed regions         [XX]               3        0.4%*  
                                           ----      ------
Non-glycine and non-proline residues        724      100.0%

End-residues (excl. Gly and Pro)              8

Glycine residues                             53
Proline residues                             42
                                           ----
Total number of residues                    827


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.34      
     Chi1-chi2 distribution           0.02      
     Chi1 only                        0.05      
     Chi3 & chi4                      0.55      
     Omega                            0.01      
                                                  -0.03      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.37      
     Main-chain bond angles           0.35      
                                                   0.36      
                                                  =====

     OVERALL AVERAGE                               0.12      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

spacer

spacer