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PDBsum entry 6tmo

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Top Page protein ligands Protein-protein interface(s) links
Immune system PDB id
6tmo
Contents
Protein chains
276 a.a.
100 a.a.
197 a.a.
244 a.a.
Ligands
GLU-ALA-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
GOL ×5
EDO ×7
SO4 ×5
TAM ×3
Waters ×388

References listed in PDB file
Key reference
Title Molecular rules underpinning enhanced affinity binding of human t cell receptors engineered for immunotherapy.
Authors R.M.Crean, B.J.Maclachlan, F.Madura, T.Whalley, P.J.Rizkallah, C.J.Holland, C.Mcmurran, S.Harper, A.Godkin, A.K.Sewell, C.R.Pudney, M.W.Van der kamp, D.K.Cole.
Ref. Mol Ther Oncolytics, 2020, 18, 443-456. [DOI no: 10.1016/j.omto.2020.07.008]
PubMed id 32913893
Abstract
Immuno-oncology approaches that utilize T cell receptors (TCRs) are becoming highly attractive because of their potential to target virtually all cellular proteins, including cancer-specific epitopes, via the recognition of peptide-human leukocyte antigen (pHLA) complexes presented at the cell surface. However, because natural TCRs generally recognize cancer-derived pHLAs with very weak affinities, efforts have been made to enhance their binding strength, in some cases by several million-fold. In this study, we investigated the mechanisms underpinning human TCR affinity enhancement by comparing the crystal structures of engineered enhanced affinity TCRs with those of their wild-type progenitors. Additionally, we performed molecular dynamics simulations to better understand the energetic mechanisms driving the affinity enhancements. These data demonstrate that supra-physiological binding affinities can be achieved without altering native TCR-pHLA binding modes via relatively subtle modifications to the interface contacts, often driven through the addition of buried hydrophobic residues. Individual energetic components of the TCR-pHLA interaction governing affinity enhancements were distinct and highly variable for each TCR, often resulting from additive, or knock-on, effects beyond the mutated residues. This comprehensive analysis of affinity-enhanced TCRs has important implications for the future rational design of engineered TCRs as efficacious and safe drugs for cancer treatment.
PROCHECK
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