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PDBsum entry 6tkh

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Blood clotting PDB id
6tkh
Contents
Protein chains
36 a.a.
251 a.a.
24 a.a.
Ligands
GOL ×2
NAG
Metals
_NA
Waters ×169

References listed in PDB file
Key reference
Title Sulfotyrosine-Mediated recognition of human thrombin by a tsetse fly anticoagulant mimics physiological substrates.
Authors B.M.Calisto, J.Ripoll-Rozada, L.J.Dowman, C.Franck, S.M.Agten, B.L.Parker, R.C.Veloso, N.Vale, P.Gomes, D.De sanctis, R.J.Payne, P.J.B.Pereira.
Ref. Cell Chem Biol, 2021, 28, 26. [DOI no: 10.1016/j.chembiol.2020.10.002]
PubMed id 33096052
Abstract
Despite possessing only 32 residues, the tsetse thrombin inhibitor (TTI) is among the most potent anticoagulants described, with sub-picomolar inhibitory activity against thrombin. Unexpectedly, TTI isolated from the fly is 2000-fold more active and 180 Da heavier than synthetic and recombinant variants. We predicted the presence of a tyrosine O-sulfate post-translational modification of TTI, prompting us to investigate the effect of the modification on anticoagulant activity. A combination of chemical synthesis and functional assays was used to reveal that sulfation significantly improved the inhibitory activity of TTI against thrombin. Using X-ray crystallography, we show that the N-terminal sulfated segment of TTI binds the basic exosite II of thrombin, establishing interactions similar to those of physiologic substrates, while the C-terminal segment abolishes the catalytic activity of thrombin. This non-canonical mode of inhibition, coupled with its potency and small size, makes TTI an attractive scaffold for the design of novel antithrombotics.
PROCHECK
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 Headers

 

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