PDBsum entry 6tfp

Tunnel analysis for: 6tfp calculated with

MOLE 2.0

PDB id

6tfp

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.62

2.45

18.5

2.12

0.79

1.5

80

1

0

1

8

3

0

0

2

1.50

2.45

22.2

0.45

-0.10

8.2

78

1

1

2

7

1

0

1

N6Z 702 C

3

1.47

1.48

22.4

0.20

-0.10

5.5

84

1

1

5

1

2

2

0

4

1.41

1.41

22.1

-0.03

-0.17

7.0

84

1

1

4

1

2

2

0

5

1.09

1.35

26.0

0.20

0.29

6.0

72

2

1

0

4

3

1

0

6

1.11

1.46

24.4

1.97

0.66

5.0

83

1

0

1

8

1

0

1

7

1.43

1.43

22.2

0.02

-0.17

6.4

84

1

1

4

1

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.