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PDBsum entry 6tcp

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6tcp calculated with MOLE 2.0 PDB id
6tcp
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.63 2.63 34.3 -1.53 -0.66 13.6 94 3 2 9 4 0 2 0  
2 3.42 3.42 36.3 -0.74 -0.54 4.1 77 0 1 3 1 0 3 0  
3 3.59 3.78 39.1 -2.03 -0.60 17.1 91 3 2 6 4 0 2 0  
4 3.63 3.63 39.2 -2.33 -0.71 24.8 75 3 6 1 0 0 5 0  
5 1.43 1.42 51.3 -1.09 -0.52 13.7 91 3 2 8 5 0 0 0  
6 2.41 2.51 60.5 -0.40 -0.33 11.4 88 4 3 9 6 1 2 0  
7 3.60 3.78 62.2 -1.15 -0.62 8.2 84 2 2 6 4 0 5 0  
8 2.43 2.53 64.0 -0.20 -0.32 7.1 84 3 2 5 5 2 3 0  SO4 301 L
9 2.42 2.52 71.9 -0.02 -0.36 6.0 87 2 1 9 6 1 3 0  
10 1.26 1.29 72.4 -2.25 -0.65 26.5 82 7 8 4 5 0 4 0  
11 2.42 2.51 74.7 -1.05 -0.42 17.0 82 5 5 9 6 1 4 0  
12 2.48 2.58 74.8 -1.38 -0.39 19.2 82 10 4 9 6 2 4 0  
13 3.64 3.65 74.8 -1.20 -0.68 8.1 87 2 4 8 3 0 5 0  
14 3.62 3.78 78.6 -0.83 -0.57 8.1 88 3 3 8 4 0 5 0  SO4 301 L
15 3.62 3.79 84.5 -2.06 -0.57 21.0 84 9 5 10 5 0 5 0  
16 3.86 3.86 83.0 -1.18 -0.68 10.2 93 3 3 10 2 0 3 0  
17 3.52 3.78 85.4 -2.15 -0.67 19.1 81 6 7 9 5 0 6 0  
18 3.84 3.85 87.3 -0.43 -0.50 5.5 83 1 3 5 3 1 6 0  SO4 301 L
19 1.18 1.29 88.1 -1.73 -0.71 21.3 95 8 5 8 3 0 0 0  
20 3.84 3.96 88.6 -0.90 -0.60 8.9 89 3 5 9 3 0 5 0  SO4 301 L
21 1.25 1.30 89.0 -1.13 -0.54 16.2 90 6 4 11 9 1 3 0  
22 4.68 5.26 89.0 -1.95 -0.72 19.5 89 6 7 10 2 0 3 0  
23 3.82 4.00 92.9 -1.52 -0.52 16.6 81 7 5 7 4 1 6 0  
24 3.85 3.99 94.5 -2.02 -0.59 20.7 85 9 7 11 4 0 5 0  
25 1.25 1.31 98.9 -1.15 -0.56 16.1 91 6 6 13 8 1 3 0  
26 3.51 3.67 98.8 -2.05 -0.69 18.0 83 6 9 11 5 0 6 0  
27 2.46 2.55 103.3 -0.50 -0.49 9.0 95 5 2 17 7 1 0 0  
28 3.63 3.79 104.7 -1.00 -0.62 9.9 96 5 3 17 6 0 2 0  
29 4.29 4.47 114.7 -1.06 -0.65 10.3 96 5 5 18 5 0 2 0  
30 1.15 1.38 139.8 -1.75 -0.54 18.8 76 9 11 8 5 1 11 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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