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PDBsum entry 6t90

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 6t90 calculated with MOLE 2.0 PDB id
6t90
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.16 3.16 25.5 -2.81 -0.21 34.4 76 3 0 0 0 1 0 0  DA 39 I DT 112 I DT 115 I DG 29 J DG 30 J DA 31 J
DG 32 J DA 33 J
2 1.87 1.96 27.7 -1.93 -0.50 19.8 78 5 0 1 1 1 0 0  DA 19 I DC 92 I DC 93 I DA 103 I DT 104 I DG 41 J
DT 42 J DT 58 J DA 59 J DA 60 J
3 1.84 1.93 29.9 -2.41 -0.59 28.7 75 3 0 0 0 0 0 0  DA 29 I DA 103 I DT 104 I DT 105 I DG 39 J DG 41
J DT 42 J
4 3.32 3.33 30.5 -2.09 -0.62 24.8 77 6 0 0 0 0 0 0  DA 39 I DG 40 I DC 42 I DA 43 I DG 44 I DG 29 J
DG 101 J DG 103 J DC 104 J DT 105 J
5 3.59 4.03 36.8 -1.83 -0.79 21.8 81 5 2 1 0 0 0 0  PTD 201 C DA 29 I DA 39 I DG 114 I DT 115 I DG 29
J DG 39 J DC 114 J DC 115 J
6 3.16 3.16 38.3 -1.86 -0.31 22.4 92 3 0 1 1 1 0 0  DA 39 I DC 111 I DT 112 I DG 114 I DT 115 I DG 29
J DG 30 J DA 31 J DG 32 J DA 33 J DC 34 J DG 41 J
7 2.39 2.39 55.2 -2.27 -0.38 26.0 80 8 0 0 2 1 0 0  PTD 201 C DA 29 I DA 30 I DT 31 I DT 32 I DG 33 I
DG 34 I DG 39 J DC 111 J DG 112 J DA 113 J DC 114
J DC 115 J
8 1.97 3.90 58.5 -2.43 -0.35 27.9 80 10 3 4 3 3 0 0  PTD 201 C DA 19 I DC 92 I DC 93 I DA 103 I DT 58
J DA 59 J DA 60 J
9 1.84 1.94 66.0 -1.69 -0.58 18.1 88 7 0 5 3 1 0 0  DA 19 I DG 94 I DA 103 I DT 104 I DG 41 J DT 42 J
10 3.30 3.41 68.5 -1.55 -0.67 15.9 86 8 1 5 1 1 0 0  DC 42 I DA 43 I DG 44 I DA 49 I DA 133 I DT 134 I
DT 9 J DA 10 J DA 19 J DC 93 J DG 101 J DG 103 J
DC 104 J
11 1.84 3.30 71.4 -2.41 -0.39 31.0 80 12 4 5 3 2 0 0  PTD 201 C DA 29 I DT 105 I DG 39 J
12 2.20 3.13 72.5 -2.32 -0.46 27.4 79 12 4 5 3 3 1 0  PTD 201 G DA 39 I DT 115 I DG 29 J
13 2.20 3.16 74.5 -2.09 -0.46 24.4 76 14 3 5 3 5 1 0  PTD 201 G DC 42 I DA 43 I DG 44 I DG 101 J DG 103
J DC 104 J
14 3.36 3.58 76.1 -1.91 -0.68 21.0 86 8 2 5 1 0 1 0  PTD 201 G DA 39 I DA 49 I DT 115 I DA 133 I DT
134 I DT 9 J DA 10 J DA 19 J DG 29 J DC 93 J
15 1.96 1.96 77.1 -2.11 -0.71 17.7 86 4 2 5 1 0 1 0  DA 133 I DT 134 I DT 136 I DT 9 J DA 10 J DT 11 J
16 1.59 1.59 85.4 -1.76 -0.56 17.9 80 7 0 2 0 1 1 0  DT 68 I DA 69 I DC 70 I DG 71 I DC 72 I DA 133 I
DT 134 I DT 142 I DC 143 I DG 5 J DA 6 J DG 8 J
DT 9 J DA 10 J DT 11 J DG 74 J DC 75 J
17 2.67 2.69 94.4 -0.96 -0.47 13.9 89 5 1 6 3 1 0 0  PTD 201 D DG 12 I DT 13 I DT 22 I DC 23 I DA 29 I
DA 103 I DT 104 I DT 105 I DC 49 J DC 123 J DG
124 J DG 130 J DC 131 J DT 133 J
18 1.85 2.62 96.9 -2.14 -0.45 24.5 84 12 3 8 4 3 0 0  PTD 201 C DA 19 I DG 94 I DA 103 I
19 1.59 1.59 105.5 -1.40 -0.35 14.9 80 5 1 3 3 1 2 0  DT 68 I DA 69 I DC 70 I DG 71 I DC 72 I DT 142 I
DC 143 I DG 5 J DA 6 J DG 8 J DT 9 J DG 74 J DC
75 J
20 2.80 4.01 192.8 -1.84 -0.59 23.3 82 12 13 8 8 2 0 0  PTD 201 D DG 12 I DT 13 I DT 22 I DC 23 I DA 121
J DG 122 J DG 130 J DC 131 J DT 133 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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