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PDBsum entry 6t90

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Top Page protein dna_rna ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6t90 calculated with MOLE 2.0 PDB id
6t90
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.16 1.23 15.2 -2.28 -0.59 25.8 91 3 0 1 1 0 0 0  DA 138 J DA 139 J
2 1.18 1.23 15.3 -2.10 -0.61 23.7 91 3 0 1 1 0 0 0  DA 138 J DA 139 J DG 140 J
3 1.22 1.22 17.1 -1.62 -0.65 17.4 91 3 0 2 1 0 0 0  DT 10 I DA 138 J DA 139 J DG 140 J DT 141 J
4 1.23 1.23 19.2 -1.62 -0.62 17.6 91 3 0 2 2 0 0 0  DA 138 J DA 139 J DG 140 J DT 141 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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