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PDBsum entry 6t1f

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 6t1f calculated with MOLE 2.0 PDB id
6t1f
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.23 1.23 31.2 -2.54 -0.71 32.1 89 2 2 1 1 0 0 0  DA 10 G DC 11 G DT 20 G DT 7 H DT 8 H DC 9 H
2 1.13 1.84 36.1 0.19 -0.16 9.5 86 2 3 0 6 1 0 0  DG 12 E DT 13 E DG 14 E DG 14 F DA 15 F
3 2.32 2.33 42.9 -1.64 -0.69 17.4 85 4 0 1 0 0 0 0  DC 9 E DA 10 E DC 18 E DA 19 E DT 20 E DC 21 E DC
22 E DG 5 F DT 6 F DT 7 F DT 8 F DC 9 F DA 10 F
DT 7 G DT 8 G DC 9 G DA 19 H DT 20 H
4 1.32 1.32 54.2 -0.67 -0.77 5.3 91 1 1 1 1 0 0 0  DA 3 E DT 4 E DG 5 E DT 6 E DT 7 E DT 8 E DC 9 E
DA 10 E DA 19 F DT 20 F DC 21 F DC 22 F DT 20 H
5 3.30 3.62 28.7 -2.12 -0.76 27.9 82 3 7 1 2 0 1 0  DT 13 G DG 14 H
6 3.30 3.58 30.8 -2.25 -0.85 28.4 82 3 7 2 1 0 1 0  
7 2.32 2.43 35.2 -1.42 -0.42 25.0 82 5 6 1 3 1 0 0  DT 13 G DG 14 H
8 1.45 1.86 36.4 -1.56 -0.75 22.2 84 1 3 1 1 0 0 0  DG 2 G DA 3 G DG 14 H DA 15 H DA 16 H DA 17 H
9 2.34 2.49 60.0 -2.01 -0.38 26.4 83 6 3 3 3 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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