spacer
spacer

PDBsum entry 6t06

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6t06 calculated with MOLE 2.0 PDB id
6t06
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 1.62 17.4 -1.86 -0.31 22.4 85 3 1 1 2 0 1 0  SO4 603 B
2 1.53 1.64 19.7 -2.33 -0.56 26.9 87 3 2 1 1 0 1 0  SO4 603 B
3 1.57 1.69 24.8 -1.93 -0.45 21.3 80 4 0 1 1 0 1 0  
4 1.57 1.68 26.3 -1.84 -0.58 19.4 80 4 1 1 1 0 1 0  
5 2.17 2.38 17.3 -0.42 0.20 6.2 68 1 1 2 3 2 1 0  M5H 601 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer