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PDBsum entry 6sn3

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 6sn3 calculated with MOLE 2.0 PDB id
6sn3
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.80 1.89 43.8 -2.55 -0.53 23.9 88 6 4 7 3 1 2 0  
2 1.30 1.30 53.3 -0.63 -0.17 11.2 86 4 1 8 6 3 0 0  
3 1.26 1.47 55.9 -0.84 -0.27 10.1 81 4 2 4 5 3 0 0  
4 1.36 1.34 56.0 -1.38 -0.20 14.2 82 5 4 7 5 6 0 0  
5 1.73 1.94 57.4 -0.06 0.06 14.8 81 4 5 2 8 2 1 0  
6 1.82 1.89 59.6 -1.56 -0.33 16.2 87 6 3 12 3 3 2 0  
7 1.83 1.89 62.3 -2.01 -0.31 18.2 84 7 6 11 2 6 1 0  
8 1.29 1.34 67.8 -0.25 0.18 13.0 77 4 5 4 10 5 1 0  
9 1.83 1.83 69.6 -2.35 -0.56 22.2 85 8 5 7 3 1 3 0  
10 2.20 2.64 70.3 -1.41 -0.36 14.2 85 6 3 9 4 2 2 0  
11 1.17 1.16 71.7 -0.27 0.05 6.7 76 4 2 6 9 6 0 0  
12 1.37 1.35 72.0 -1.57 -0.46 16.4 82 6 4 3 7 1 2 0  
13 2.23 2.63 73.0 -1.90 -0.35 15.9 82 7 6 8 3 5 2 0  
14 1.61 1.81 80.2 -0.92 -0.19 21.4 78 6 5 2 6 4 1 0  
15 1.45 1.47 82.7 -1.07 -0.32 19.1 82 7 6 5 9 3 2 0  
16 1.30 1.47 90.3 -1.30 -0.36 13.5 83 7 3 6 8 3 2 0  
17 1.41 1.40 93.0 0.41 0.22 3.6 77 2 2 5 9 8 1 0  
18 1.60 1.82 96.8 -0.78 -0.08 20.0 80 7 7 2 7 5 0 0  
19 1.48 1.47 100.7 -1.03 -0.35 17.9 80 7 7 4 9 3 3 0  
20 1.42 1.47 100.8 -1.14 -0.24 16.2 81 8 8 9 9 8 2 0  
21 1.43 3.65 30.2 -2.02 -0.43 19.4 73 2 3 3 1 3 0 0  
22 1.47 2.26 46.3 -2.37 -0.57 20.6 77 5 6 5 2 2 0 0  
23 1.57 3.81 26.5 1.03 0.44 8.5 80 1 1 2 10 2 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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