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PDBsum entry 6sdk
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Tunnel analysis for: 6sdk calculated with  MOLE 2.0
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PDB id
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6sdk
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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8 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.22 |
1.45 |
35.3 |
-2.03 |
-0.29 |
25.2 |
85 |
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6 |
2 |
4 |
5 |
0 |
0 |
0 |
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CDP 301 B CA 302 B CA 303 B
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2 |
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1.18 |
2.19 |
43.5 |
-2.23 |
-0.41 |
26.4 |
84 |
7 |
3 |
5 |
5 |
0 |
0 |
0 |
CDP 301 A CDP 301 B CA 302 B CA 303 B
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3 |
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1.51 |
1.66 |
18.2 |
-2.26 |
-0.59 |
32.2 |
77 |
5 |
3 |
0 |
1 |
1 |
0 |
0 |
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4 |
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1.52 |
1.66 |
20.9 |
-2.20 |
-0.54 |
30.7 |
76 |
3 |
3 |
1 |
1 |
1 |
0 |
0 |
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5 |
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1.28 |
3.73 |
35.5 |
-1.68 |
-0.24 |
22.5 |
85 |
6 |
2 |
4 |
5 |
0 |
0 |
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CDP 301 D CA 302 D CA 303 D
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6 |
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1.43 |
1.63 |
42.1 |
-2.40 |
-0.39 |
29.9 |
84 |
6 |
3 |
4 |
5 |
0 |
0 |
0 |
CDP 301 C CDP 301 D CA 302 D CA 303 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program