PDBsum entry 6rvb

Pore analysis for: 6rvb calculated with

MOLE 2.0

PDB id

6rvb

Pores calculated on whole structure

Pores calculated excluding ligands

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2 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.07

2.34

27.3

-0.62

-0.25

13.4

86

4

3

3

5

1

1

1

FAD 501 B COA 503 B

2

2.07

2.35

27.4

0.11

0.20

9.5

79

2

1

1

8

3

1

1

FAD 501 B NAD 502 B COA 503 B

3

2.08

2.36

32.9

-0.48

-0.03

12.8

85

5

1

3

6

2

1

1

FAD 501 A COA 503 A

4

2.28

3.46

42.9

-1.04

-0.02

18.0

77

6

3

2

5

4

2

1

FAD 501 B NAD 502 B

5

1.14

3.02

56.2

-0.01

-0.03

12.7

78

4

4

2

12

3

1

1

FAD 501 A NAD 502 A COA 503 A

6

1.15

2.63

57.8

-0.16

-0.18

14.0

76

5

5

1

9

3

0

1

FAD 501 A NAD 502 A

7

2.09

2.34

66.6

-0.84

0.07

16.3

78

8

2

3

10

4

3

1

FAD 501 A NAD 502 A COA 503 A

8

1.15

2.93

82.4

-0.32

-0.03

15.0

73

8

6

1

12

5

2

1

FAD 501 A NAD 502 A

9

2.18

3.74

116.6

-1.99

-0.31

24.9

76

12

7

3

8

5

3

1

FAD 501 D NAD 502 D

10

1.94

2.43

45.3

-2.43

-0.58

26.9

79

5

4

2

3

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.