PDBsum entry 6qhc

Tunnel analysis for: 6qhc calculated with

MOLE 2.0

PDB id

6qhc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.75

1.75

26.4

-1.11

-0.37

17.1

81

4

3

2

2

1

0

1

135 302 B

2

1.75

1.75

26.8

-0.82

-0.26

15.6

80

4

1

3

3

1

0

1

135 302 B

3

1.72

1.72

28.6

-0.33

-0.16

7.9

74

2

1

2

2

1

1

2

135 302 B

4

1.39

1.39

31.3

-1.14

-0.40

17.1

80

4

3

3

2

2

0

1

135 302 B

5

1.39

1.39

33.5

-0.43

-0.24

8.6

74

2

1

3

2

2

1

2

135 302 B

6

1.19

1.19

19.2

0.18

-0.32

5.4

74

1

1

0

4

0

1

0

7

1.22

1.51

17.5

-0.05

-0.31

9.7

81

3

0

2

3

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.