PDBsum entry 6pyh

Pore analysis for: 6pyh calculated with

MOLE 2.0

PDB id

6pyh

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

18 pores, coloured by radius

18 pores, coloured by radius

18 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.59

2.75

26.8

-0.07

0.01

13.9

86

5

0

1

5

1

0

0

2

1.36

3.56

33.2

0.84

0.53

7.6

79

1

2

1

7

3

0

0

3

2.45

2.78

37.6

-2.07

-0.19

26.8

79

9

3

2

3

3

0

0

4

2.45

2.77

40.1

-1.97

-0.50

22.8

86

6

3

6

3

2

0

0

5

1.23

1.23

56.7

-1.35

-0.13

21.1

86

6

1

2

9

2

0

0

6

1.27

1.47

64.2

0.52

0.27

6.1

80

3

1

4

10

3

2

2

7

1.83

1.88

75.6

-1.84

-0.30

27.1

79

8

6

3

7

3

0

0

8

2.33

2.96

78.9

-1.40

-0.30

22.1

86

7

6

9

8

1

0

0

9

1.26

3.06

92.9

-0.34

-0.11

14.6

86

5

3

6

9

2

2

0

10

1.83

1.89

92.7

-1.58

-0.21

22.4

74

8

5

2

4

7

0

0

11

1.18

3.56

103.0

-0.22

-0.01

12.8

81

8

4

6

10

5

2

0

12

1.41

1.57

109.1

-1.34

-0.40

15.2

82

6

4

7

4

4

2

1

13

1.30

1.30

111.7

-0.22

-0.06

16.4

86

7

5

8

10

2

0

0

14

1.21

1.47

126.5

-0.75

0.02

18.1

78

11

6

5

16

7

2

1

15

1.22

3.54

134.1

0.04

0.00

16.0

87

8

5

7

17

1

0

0

16

1.29

1.30

136.3

-0.17

-0.20

12.6

86

7

3

8

12

1

1

2

17

1.49

1.60

150.9

-1.24

-0.19

21.1

86

9

7

8

12

2

0

0

18

2.01

2.12

179.4

-1.09

-0.26

20.7

84

11

8

9

14

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.