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PDBsum entry 6py0

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6py0 calculated with MOLE 2.0 PDB id
6py0
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.83 1.88 19.7 0.95 1.30 1.4 67 0 0 1 6 6 0 0  
2 1.69 1.74 24.6 -0.11 0.17 12.8 84 3 1 2 6 2 0 0  RTL 201 C
3 1.67 1.68 24.6 -0.18 0.24 9.2 85 3 0 3 6 2 0 0  
4 1.76 1.81 27.3 0.41 1.08 6.0 71 2 0 1 6 6 0 0  
5 1.78 1.83 27.7 -0.27 0.21 17.3 80 3 3 3 5 3 0 0  RTL 201 C
6 1.79 1.84 27.9 0.12 1.16 6.5 69 4 0 1 5 6 0 0  
7 1.66 1.71 32.5 1.82 0.84 1.2 81 1 0 1 10 4 1 0  RTL 201 C
8 1.71 1.76 38.6 1.83 0.79 2.9 80 1 0 1 9 5 0 0  RTL 201 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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