spacer
spacer

PDBsum entry 6pxh

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6pxh calculated with MOLE 2.0 PDB id
6pxh
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.05 1.60 47.0 -0.37 -0.25 5.2 74 0 2 1 4 1 3 0  
2 1.81 1.82 67.1 -0.84 -0.48 11.3 92 5 3 7 6 1 1 0  
3 1.86 4.83 72.2 -0.81 -0.39 11.1 81 2 4 2 5 1 3 0  
4 2.87 3.06 27.1 -1.14 -0.47 5.4 78 0 1 3 0 1 3 0  
5 2.38 2.40 36.4 -0.97 -0.33 5.3 76 0 2 2 2 1 5 0  
6 1.99 1.99 36.7 -0.76 -0.56 2.3 90 0 0 4 2 0 2 0  
7 1.62 2.08 57.4 -1.32 -0.58 10.6 89 1 3 7 1 1 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer