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PDBsum entry 6pv4

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Pore analysis for: 6pv4 calculated with MOLE 2.0 PDB id
6pv4
Pores calculated on whole structure Pores calculated excluding ligands

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19 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.48 1.71 27.2 -1.56 -0.49 16.0 83 3 2 2 2 2 1 0  
2 1.88 2.02 30.2 -1.15 -0.31 14.3 86 4 3 3 3 1 1 0  
3 2.98 3.19 33.6 -2.03 -0.71 24.3 87 1 6 1 2 0 1 0  CA 701 D
4 1.86 2.39 35.1 -1.26 -0.40 11.6 90 4 3 6 3 1 1 0  
5 1.51 1.69 41.2 -1.43 -0.39 12.8 89 4 2 6 3 2 1 0  EDO 705 A
6 1.25 1.24 43.1 -1.35 -0.48 11.9 86 4 4 7 4 1 1 0  EDO 705 A
7 1.48 2.19 45.8 -1.31 -0.35 14.6 86 4 3 6 6 1 2 0  
8 3.01 4.95 49.7 -3.16 -0.70 24.0 90 9 5 10 0 1 0 0  
9 2.26 3.52 57.2 -1.62 -0.29 19.8 87 7 7 10 3 4 0 0  EDO 708 A EDO 710 A EDO 707 B
10 2.27 2.30 57.0 -1.74 -0.65 25.6 78 3 8 2 1 1 1 0  CA 704 B EDO 708 B
11 2.33 2.57 60.0 -1.84 -0.62 21.3 83 4 8 3 1 1 1 0  EDO 704 A
12 2.21 3.51 62.7 -1.80 -0.32 18.6 90 6 5 13 3 4 0 0  EDO 705 A EDO 706 A EDO 709 B EDO 711 B
13 1.94 2.60 70.3 -2.59 -0.61 24.4 91 6 6 10 2 0 2 0  EDO 704 A
14 1.27 1.55 72.0 -1.82 -0.44 20.4 86 9 8 9 2 3 1 0  EDO 708 A EDO 710 A EDO 707 B
15 2.27 3.19 74.0 -2.21 -0.50 17.8 90 8 8 14 1 3 0 0  EDO 711 C EDO 712 C
16 1.51 1.69 79.7 -1.96 -0.44 19.2 88 7 5 11 2 4 1 0  EDO 705 A EDO 706 A EDO 709 B EDO 711 B
17 1.25 1.29 81.6 -1.86 -0.48 18.0 87 8 7 12 3 3 1 0  EDO 705 A EDO 706 A EDO 709 B EDO 711 B
18 1.28 1.54 82.0 -1.90 -0.48 17.6 88 9 5 11 2 3 1 0  EDO 708 A EDO 710 A EDO 707 B
19 1.71 2.29 82.2 -1.79 -0.46 19.0 86 9 8 12 5 3 2 0  EDO 708 A EDO 710 A EDO 707 B
20 2.14 3.16 81.3 -1.61 -0.37 18.4 88 6 5 10 3 3 1 0  EDO 711 C EDO 712 C
21 1.52 1.69 86.5 -1.76 -0.42 17.4 85 10 9 11 2 5 1 0  EDO 705 A EDO 706 A EDO 709 B EDO 711 B
22 1.23 1.24 88.4 -1.71 -0.47 16.8 84 10 11 12 3 4 1 0  EDO 705 A EDO 706 A EDO 709 B EDO 711 B
23 1.92 2.25 98.7 -1.98 -0.50 15.5 87 10 10 15 2 5 1 0  EDO 706 C EDO 708 C EDO 706 D
24 1.92 2.23 109.8 -1.57 -0.43 15.4 87 9 7 12 4 4 2 0  EDO 706 C EDO 708 C EDO 706 D
25 1.50 2.01 116.4 -1.59 -0.40 14.6 87 8 8 18 6 6 2 0  EDO 708 A EDO 710 A EDO 707 B EDO 711 C EDO 712 C
26 1.93 2.56 113.5 -1.75 -0.44 17.2 86 9 10 15 4 5 3 0  EDO 704 A EDO 706 C EDO 708 C EDO 706 D
27 1.48 2.10 141.2 -1.56 -0.41 13.6 86 10 10 19 7 7 3 0  EDO 708 A EDO 707 B EDO 706 C EDO 708 C EDO 706 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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