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PDBsum entry 6psr

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6psr calculated with MOLE 2.0 PDB id
6psr
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.07 1.28 41.0 1.64 0.48 6.5 76 2 0 1 11 1 0 1  
2 1.32 1.32 16.1 -0.09 -0.43 8.2 70 1 0 0 3 0 0 0  
3 1.23 1.35 16.2 1.21 0.19 7.9 71 1 1 0 5 0 0 0  
4 1.25 1.25 16.0 -1.30 -0.57 17.9 83 2 1 0 2 0 1 0  
5 1.29 1.50 17.5 -1.72 -0.61 21.1 85 2 1 0 1 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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