PDBsum entry 6pru Go to PDB code:  Tunnel analysis for: 6pru calculated with MOLE 2.0 PDB id 6pru Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.41 24.6 -0.70 -0.52 13.9 85 0 3 2 5 0 0 0   2 1.13 1.40 16.2 1.72 0.76 5.6 77 1 0 1 5 1 1 0  VRB 602 B 3 2.13 5.12 18.7 0.04 0.70 12.0 68 1 1 2 4 4 0 1  VRB 602 B EDO 603 B 4 1.28 2.77 24.5 0.65 0.77 12.1 75 3 1 3 8 4 0 1  VRB 602 B EDO 603 B 5 1.18 2.71 26.5 0.51 0.64 12.8 75 4 1 3 8 4 0 1  VRB 601 A EDO 602 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.