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PDBsum entry 6prc

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6prc calculated with MOLE 2.0 PDB id
6prc
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.52 4.95 31.4 0.81 0.91 15.5 77 5 0 0 9 5 0 0  BCB 302 L BCB 304 L BPB 401 M BCB 805 M BCB 806 M
2 1.35 1.90 45.1 -0.06 0.19 12.1 83 5 1 4 6 5 0 0  HEM 339 C BCB 302 L BPB 401 M BCB 805 M BCB 806 M
3 1.50 3.53 47.7 1.01 0.45 7.9 82 5 0 0 15 2 1 3  HEM 337 C HEM 338 C HEM 340 C
4 1.31 1.32 48.5 -0.26 -0.02 12.5 81 2 3 3 10 5 0 0  CEB 502 L BPB 401 M
5 1.37 1.86 71.3 0.30 0.35 11.2 82 6 1 4 14 7 0 1  HEM 339 C HEM 340 C BCB 302 L BPB 401 M BCB 805 M
BCB 806 M
6 1.36 2.81 76.7 -0.97 0.05 18.0 79 9 1 4 12 4 1 1  HEM 339 C HEM 340 C
7 1.32 1.90 79.5 0.15 0.43 11.0 78 7 1 4 15 12 0 1  HEM 339 C HEM 340 C BCB 302 L BCB 304 L BPB 402 L
BCB 806 M
8 1.27 1.84 86.6 -1.01 -0.02 15.3 82 9 2 6 10 6 1 0  HEM 339 C BCB 302 L BCB 304 L BCB 806 M
9 1.27 1.55 93.5 -1.12 -0.40 19.3 84 9 8 3 12 2 3 0  
10 1.29 2.54 107.9 0.12 0.29 13.0 78 11 1 3 23 5 2 4  HEM 337 C HEM 338 C HEM 339 C HEM 340 C
11 1.35 1.93 110.7 0.62 0.51 9.3 78 10 1 3 26 13 1 4  HEM 337 C HEM 338 C HEM 339 C HEM 340 C BCB 302 L
BCB 304 L BPB 402 L BCB 806 M
12 1.18 1.42 119.2 0.10 0.37 12.9 69 9 4 2 18 18 2 0  LDA 701 H SO4 801 H BCB 302 L BCB 304 L BPB 402 L
MQ7 501 M LDA 705 M BCB 805 M BCB 806 M

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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