PDBsum entry 6pnh

Pore analysis for: 6pnh calculated with

MOLE 2.0

PDB id

6pnh

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

1 pore, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.32

5.86

29.5

-2.23

-0.31

21.1

74

2

2

2

0

1

1

0

OSD 803 A

2

2.10

2.10

36.0

0.02

0.26

9.2

80

2

1

6

8

5

0

1

OSD 803 A HEM 803 B OSD 804 B

3

2.11

2.11

43.5

-0.28

0.10

13.0

80

3

2

4

9

4

1

1

OSD 803 A HEM 803 B OSD 804 B

4

1.52

1.52

55.5

-1.79

-0.36

21.4

76

6

6

2

3

2

2

2

5

1.26

1.41

61.8

0.55

0.38

7.3

69

2

2

2

9

8

3

1

HEM 801 A OSD 803 A HEM 803 B OSD 804 B

6

1.55

1.56

64.2

-0.84

-0.22

12.5

77

4

3

5

7

4

3

3

HEM 801 A OSD 802 A

7

1.99

1.98

65.2

-0.96

0.04

15.8

73

4

6

5

5

6

2

1

HEM 801 A OSD 802 A OSD 801 B

8

1.27

1.45

68.2

0.81

0.39

5.4

73

0

2

5

11

8

2

2

HEM 801 A HEM 803 B

9

1.54

1.52

82.0

-1.01

-0.20

16.6

82

5

6

6

11

3

2

3

HEM 803 B OSD 804 B

10

1.61

1.62

97.7

-1.27

-0.22

18.7

75

7

8

5

9

4

4

3

OSD 803 A HEM 803 B OSD 804 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.