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PDBsum entry 6pme

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6pme calculated with MOLE 2.0 PDB id
6pme
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.76 1.76 27.7 0.06 -0.03 12.8 84 3 2 2 5 1 0 0  OOY 802 B
2 1.28 1.55 33.0 0.84 0.07 7.0 78 1 2 1 6 2 0 0  OOY 802 C
3 1.47 1.64 37.5 -0.13 -0.03 15.8 79 3 4 0 6 3 0 0  OOY 802 C
4 1.18 1.22 40.3 0.72 0.01 8.3 83 2 3 2 9 1 0 0  
5 1.18 1.21 47.4 0.50 -0.05 9.7 80 2 5 1 11 3 0 0  OOY 802 C
6 1.15 1.19 52.2 -0.32 -0.12 15.7 83 5 5 1 8 3 0 0  
7 1.42 2.72 52.9 0.02 0.04 15.6 75 5 3 1 7 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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