PDBsum entry 6pmd Go to PDB code:  Tunnel analysis for: 6pmd calculated with MOLE 2.0 PDB id 6pmd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.13 37.7 1.50 0.11 1.5 82 0 0 3 12 1 1 0  MPD 400 F 2 1.23 2.31 25.0 1.33 0.40 5.6 85 1 2 1 7 2 0 0  SHV 1 Y WFP 2 Y MP8 7 Y 3 1.23 2.11 25.8 0.39 0.10 10.7 84 1 2 1 6 2 0 0  SHV 1 Z WFP 2 Z MP8 7 Z Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.