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PDBsum entry 6pb1

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6pb1 calculated with MOLE 2.0 PDB id
6pb1
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.08 2.38 29.4 2.00 0.56 1.2 65 0 0 1 10 4 0 1  
2 1.49 2.26 51.4 -0.81 -0.40 12.2 86 4 3 7 7 0 1 0  
3 2.22 2.31 52.0 -1.30 -0.49 13.1 86 6 2 5 7 0 1 0  
4 2.19 4.20 80.1 -2.52 -0.62 32.7 77 6 4 0 2 1 1 0  
5 2.40 3.07 90.2 -1.50 -0.61 15.6 83 5 2 5 3 1 1 0  
6 1.47 3.18 108.8 -1.28 -0.49 16.1 87 7 6 7 7 1 1 1  
7 1.95 3.63 117.1 -1.91 -0.42 21.9 86 14 4 10 5 4 0 0  
8 1.90 4.13 125.5 -1.57 -0.38 18.8 87 13 4 10 7 4 1 0  
9 1.77 4.29 136.9 -1.29 -0.43 16.4 88 10 5 11 11 3 2 2  
10 1.59 3.48 145.9 -1.72 -0.48 18.2 85 14 6 14 8 5 1 1  
11 1.31 1.96 176.4 -0.46 0.13 17.0 76 15 6 9 14 13 0 1  PLM 406 P

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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