 |
PDBsum entry 6pb1
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 6pb1 calculated with MOLE 2.0
|
PDB id
|
|
|
|
6pb1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
10 pores,
coloured by radius |
 |
11 pores,
coloured by radius
|
11 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.08 |
2.38 |
29.4 |
2.00 |
0.56 |
1.2 |
65 |
 |
0 |
0 |
1 |
10 |
4 |
0 |
1 |
 |
|
 |
 |
2 |
 |
1.49 |
2.26 |
51.4 |
-0.81 |
-0.40 |
12.2 |
86 |
4 |
3 |
7 |
7 |
0 |
1 |
0 |
|
 |
3 |
 |
2.22 |
2.31 |
52.0 |
-1.30 |
-0.49 |
13.1 |
86 |
6 |
2 |
5 |
7 |
0 |
1 |
0 |
|
 |
4 |
 |
2.19 |
4.20 |
80.1 |
-2.52 |
-0.62 |
32.7 |
77 |
6 |
4 |
0 |
2 |
1 |
1 |
0 |
|
 |
5 |
 |
2.40 |
3.07 |
90.2 |
-1.50 |
-0.61 |
15.6 |
83 |
5 |
2 |
5 |
3 |
1 |
1 |
0 |
|
 |
6 |
 |
1.47 |
3.18 |
108.8 |
-1.28 |
-0.49 |
16.1 |
87 |
7 |
6 |
7 |
7 |
1 |
1 |
1 |
|
 |
7 |
 |
1.95 |
3.63 |
117.1 |
-1.91 |
-0.42 |
21.9 |
86 |
14 |
4 |
10 |
5 |
4 |
0 |
0 |
|
 |
8 |
 |
1.90 |
4.13 |
125.5 |
-1.57 |
-0.38 |
18.8 |
87 |
13 |
4 |
10 |
7 |
4 |
1 |
0 |
|
 |
9 |
 |
1.77 |
4.29 |
136.9 |
-1.29 |
-0.43 |
16.4 |
88 |
10 |
5 |
11 |
11 |
3 |
2 |
2 |
|
 |
10 |
 |
1.59 |
3.48 |
145.9 |
-1.72 |
-0.48 |
18.2 |
85 |
14 |
6 |
14 |
8 |
5 |
1 |
1 |
|
 |
11 |
 |
1.31 |
1.96 |
176.4 |
-0.46 |
0.13 |
17.0 |
76 |
15 |
6 |
9 |
14 |
13 |
0 |
1 |
PLM 406 P
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |