spacer
spacer

PDBsum entry 6pas

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6pas calculated with MOLE 2.0 PDB id
6pas
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
17 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.32 3.32 29.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 2.97 2.97 31.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
3 2.87 2.87 32.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
4 2.34 2.34 34.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
5 3.28 3.28 38.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
6 1.73 1.73 40.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
7 1.72 1.72 52.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
8 2.35 2.35 53.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
9 1.73 1.73 53.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
10 1.72 1.72 56.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
11 2.93 2.93 56.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  HEM 701 B
12 2.61 2.61 59.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  HEM 701 B
13 2.90 2.90 68.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
14 1.73 1.73 73.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
15 1.79 1.79 105.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  HEM 701 B
16 2.42 2.42 120.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  HEM 701 B
17 1.79 1.79 40.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
18 1.23 1.23 71.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer