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PDBsum entry 6odb

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6odb calculated with MOLE 2.0 PDB id
6odb
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.66 1.66 56.4 -1.80 -0.48 22.5 76 5 3 2 2 3 1 0  M8G 401 B
2 2.29 3.21 63.8 -1.78 -0.38 25.9 81 5 6 2 2 4 1 0  
3 2.18 2.41 65.5 -1.84 -0.35 21.4 80 5 7 5 2 4 3 0  
4 2.11 2.36 67.1 -2.15 -0.50 22.5 85 6 5 6 3 1 2 0  
5 1.30 1.30 88.2 -2.27 -0.46 28.1 82 8 7 3 3 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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