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PDBsum entry 6o6c

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6o6c calculated with MOLE 2.0 PDB id
6o6c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.34 2.36 50.7 -1.21 -0.35 21.8 81 6 7 2 3 2 1 0  
2 1.32 2.62 62.3 -1.48 -0.40 25.6 81 11 8 2 5 2 1 0  
3 1.34 2.55 68.6 -1.35 -0.33 25.4 79 12 8 1 6 2 0 0  
4 1.34 2.71 69.8 -1.38 -0.37 25.2 81 11 8 1 6 2 0 0  DG 31 L
5 1.17 2.80 16.0 1.84 0.91 13.4 77 2 1 0 7 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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