spacer
spacer

PDBsum entry 6o2r

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6o2r calculated with MOLE 2.0 PDB id
6o2r
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
11 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.25 2.90 38.6 -2.85 -0.69 21.2 82 4 4 5 1 1 1 0  
2 2.31 2.35 58.5 -1.90 -0.51 22.1 79 4 4 3 2 2 1 0  
3 2.26 2.92 82.3 -2.24 -0.49 21.6 82 5 8 7 3 3 1 0  
4 1.36 1.36 88.4 -2.25 -0.39 28.9 84 5 8 4 3 2 2 0  
5 1.37 1.33 142.0 -1.96 -0.38 27.2 83 10 13 6 6 2 3 0  
6 1.17 1.17 152.7 -1.81 -0.55 25.1 87 12 16 8 10 0 1 0  
7 1.35 1.37 149.6 -1.63 -0.43 23.8 88 8 10 7 5 0 2 0  
8 1.34 1.30 160.4 -2.08 -0.38 27.9 84 8 13 5 6 2 3 0  
9 1.20 1.20 181.6 -2.06 -0.55 24.9 82 13 17 7 5 1 4 0  
10 1.36 1.32 182.4 -2.04 -0.40 24.8 84 9 13 7 5 4 3 0  
11 1.90 1.98 193.7 -2.24 -0.60 25.0 85 15 18 10 10 3 1 0  
12 1.37 1.39 219.5 -2.00 -0.51 27.2 86 17 21 9 12 2 2 0  
13 1.14 1.15 222.5 -1.66 -0.49 20.1 85 15 12 12 10 4 3 0  
14 1.40 1.36 235.1 -2.03 -0.51 26.7 86 17 23 11 12 3 3 0  
15 1.21 1.20 243.2 -1.72 -0.48 22.7 83 13 22 10 9 3 3 0  
16 1.38 1.40 240.6 -2.23 -0.49 30.0 85 19 26 11 11 3 2 0  
17 1.37 1.34 239.8 -2.13 -0.54 27.4 85 15 21 10 12 4 4 0  
18 1.31 1.29 257.4 -2.09 -0.49 28.2 85 21 24 9 12 2 3 0  
19 1.19 1.19 332.3 -1.51 -0.41 19.3 84 19 20 15 13 6 6 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer