PDBsum entry 6mdb Go to PDB code:  Tunnel analysis for: 6mdb calculated with MOLE 2.0 PDB id 6mdb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.07 1.37 38.4 -1.71 -0.39 23.3 79 7 5 1 2 3 0 0   2 1.07 1.36 41.5 -1.93 -0.46 25.4 77 8 4 1 1 3 1 0   3 1.20 1.18 79.3 -1.22 -0.28 19.2 83 6 11 4 7 4 1 0   4 1.45 1.83 17.2 -1.85 -0.42 24.1 74 3 3 0 1 1 2 0   5 1.52 1.83 21.6 -1.55 -0.44 15.1 74 2 3 1 1 1 2 0   6 1.29 1.34 24.2 -1.66 -0.46 13.7 86 4 2 5 4 1 0 0   7 1.29 1.35 27.6 -1.52 -0.40 16.8 86 5 1 5 4 1 0 0   8 1.17 1.71 15.2 -0.64 0.03 23.3 78 1 4 0 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.