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PDBsum entry 6m3c

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Top Page protein Protein-protein interface(s) links
Blood clotting/immune system PDB id
6m3c
Contents
Protein chains
239 a.a.
53 a.a.
218 a.a.
221 a.a.
procheck   Generate full PROCHECK analyses

PROCHECK summary for 6m3c

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         1506       80.2%*  
Additional allowed regions [a,b,l,p]        326       17.4%          
Generously allowed regions [~a,~b,~l,~p]     21        1.1%          
Disallowed regions         [XX]              25        1.3%*  
                                           ----      ------
Non-glycine and non-proline residues       1878      100.0%

End-residues (excl. Gly and Pro)             24

Glycine residues                            180
Proline residues                            111
                                           ----
Total number of residues                   2193


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.74*     
     Chi1-chi2 distribution          -0.49      
     Chi1 only                       -0.28      
     Chi3 & chi4                      0.41      
     Omega                           -0.11      
                                                  -0.34      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.68      
     Main-chain bond angles           0.49      
                                                   0.57      
                                                  =====

     OVERALL AVERAGE                               0.02      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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