spacer
spacer

PDBsum entry 6m3c

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 6m3c calculated with MOLE 2.0 PDB id
6m3c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.20 3.37 25.8 -0.93 -0.52 11.6 80 1 2 1 3 0 2 0  
2 2.87 3.84 29.5 -0.98 -0.48 12.0 79 1 2 2 2 0 3 0  
3 1.64 1.81 38.5 -2.95 -0.88 31.1 91 3 4 5 0 0 0 0  
4 2.05 2.07 49.0 -1.97 -0.71 20.0 89 4 3 5 0 0 3 0  
5 2.07 2.08 54.7 -2.00 -0.76 17.6 96 5 1 7 1 0 0 0  
6 2.31 2.42 76.0 -1.41 -0.61 11.3 78 1 6 4 3 1 2 0  
7 2.09 2.07 92.9 -1.78 -0.66 15.7 87 5 5 9 3 1 1 0  
8 1.22 1.38 162.6 -1.14 -0.58 11.5 85 6 8 15 7 3 2 0  
9 2.02 2.27 27.3 -1.81 -0.63 17.0 94 4 2 4 1 0 1 0  
10 3.47 3.51 30.4 -2.09 -0.72 20.1 83 4 2 2 1 0 1 0  
11 1.20 1.53 31.2 -0.97 -0.42 13.8 75 2 3 2 0 1 1 1  
12 2.00 2.00 37.1 -1.62 -0.68 15.5 85 2 4 4 0 0 3 0  
13 2.01 2.01 37.2 -2.21 -0.73 23.2 86 6 4 4 1 0 0 0  
14 1.21 1.29 34.3 -1.25 -0.02 15.9 81 2 1 4 4 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer