PDBsum entry 6lyh Go to PDB code:  Tunnel analysis for: 6lyh calculated with MOLE 2.0 PDB id 6lyh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.42 22.8 0.11 0.17 10.1 82 2 1 3 4 2 0 0  SAH 501 B 2 1.27 1.41 35.5 0.78 0.39 3.5 79 2 1 2 4 5 0 0  SAH 501 B EXU 502 B 3 1.28 1.39 49.7 -0.01 -0.19 6.4 91 1 4 4 8 1 2 0  SAH 501 B 4 1.31 1.53 24.2 1.68 0.44 2.0 76 1 0 1 8 2 0 0   5 1.15 1.32 29.7 2.24 0.81 5.2 70 2 2 0 10 1 0 1   6 1.22 2.66 15.6 1.62 0.87 1.1 77 0 0 2 6 3 1 0   7 1.41 2.62 18.3 1.05 0.61 8.4 72 1 1 1 4 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.