 |
PDBsum entry 6kpy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 6kpy calculated with  MOLE 2.0
|
PDB id
|
|
|
|
6kpy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.17 |
1.66 |
55.2 |
-1.38 |
-0.49 |
19.2 |
83 |
|
3 |
7 |
5 |
6 |
3 |
1 |
0 |
|
MG 1103 C F9U 1105 C
|
 |
|
2 |
 |
1.17 |
2.61 |
15.3 |
-0.82 |
0.07 |
7.0 |
70 |
1 |
1 |
0 |
1 |
1 |
2 |
0 |
|
|
3 |
 |
1.45 |
2.23 |
20.1 |
2.41 |
0.73 |
1.1 |
68 |
0 |
0 |
0 |
6 |
2 |
0 |
0 |
|
|
4 |
 |
1.14 |
2.77 |
28.9 |
2.26 |
0.63 |
1.6 |
76 |
1 |
0 |
0 |
7 |
2 |
1 |
1 |
|
|
5 |
 |
1.19 |
1.73 |
15.6 |
-0.36 |
-0.10 |
18.6 |
90 |
2 |
2 |
0 |
4 |
0 |
0 |
0 |
|
|
6 |
 |
1.34 |
2.21 |
17.9 |
2.44 |
0.69 |
1.1 |
64 |
0 |
0 |
0 |
6 |
2 |
0 |
0 |
|
 |
7 |
 |
1.29 |
1.86 |
18.1 |
-0.42 |
-0.32 |
10.1 |
75 |
1 |
1 |
3 |
2 |
0 |
0 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program