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PDBsum entry 6j6q
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6j6q calculated with MOLE 2.0 PDB id
6j6q
Pores calculated on whole structure Pores calculated excluding ligands
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38 pores, coloured by radius 38 pores, coloured by radius 38 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 2.01 38.7 -2.74 -0.76 22.9 80 6 5 6 0 2 2 0  
2 1.75 1.75 84.4 -0.80 -0.44 11.5 77 2 2 2 2 1 2 0  G 1106 L C 1107 L A 1108 L G 1114 L C 1128 L U
1129 L U 1130 L U 1131 L U 1136 L U 1137 L
3 2.05 2.10 108.1 -1.20 -0.65 13.5 86 5 3 5 1 0 0 0  C 109 L A 110 L C 111 L U 113 L U 114 L U 115 L U
116 L U 117 L U 118 L G 119 L G 120 L C 121 L C
123 L C 124 L C 125 L A 126 L C 152 L U 153 L G
1089 L A 1090 L U 1151 L U 1152 L C 1153 L U 1154
L C 1155 L U 1159 L
4 1.71 1.71 111.2 -0.53 -0.49 10.4 91 2 2 0 4 0 1 0  C 104 L C 152 L U 153 L G 1089 L A 1090 L G 1091
L A 1092 L C 1093 L G 1094 L U 1095 L C 1096 L C
1128 L U 1129 L U 1130 L U 1131 L U 1136 L G 1139
L U 1140 L C 1141 L G 1142 L C 1143 L U 1145 L G
1146 L U 1148 L G 1149 L U 1150 L U 1151 L C 1153
L U 1154 L C 1155 L U 1159 L
5 1.73 1.73 123.5 -1.35 -0.59 14.2 84 7 1 6 1 1 0 0  G 144 L G 145 L C 152 L U 153 L G 1089 L C 1096 L
G 1106 L C 1107 L A 1108 L G 1114 L U 1136 L U
1137 L A 1147 L U 1148 L G 1149 L C 1153 L U 1154
L C 1155 L U 1159 L
6 1.98 2.08 124.3 -1.34 -0.61 14.3 87 8 3 6 3 0 2 0  C 104 L C 109 L A 110 L C 111 L U 113 L U 114 L U
115 L U 116 L U 117 L U 118 L G 119 L G 120 L C
121 L G 1094 L U 1095 L C 1096 L C 1128 L U 1129
L U 1130 L U 1131 L U 1136 L G 1149 L U 1150 L U
1151 L
7 1.92 1.92 150.4 -1.74 -0.47 20.1 81 13 10 8 10 5 8 0  A 62 B U 63 B U 64 B C 109 L
8 1.77 1.77 153.3 -1.19 -0.63 12.0 86 7 3 8 2 1 1 0  C 109 L A 110 L C 111 L U 113 L U 114 L U 115 L U
116 L U 117 L U 118 L G 119 L G 120 L C 121 L G
1094 L U 1095 L C 1096 L G 1106 L C 1107 L A 1108
L G 1114 L U 1136 L U 1137 L G 1138 L G 1149 L U
1150 L U 1151 L
9 1.52 1.52 161.0 -1.64 -0.56 19.0 81 15 8 7 4 2 1 0  C 7 D U 8 D G 21 D C 23 D A 30 D G 31 D U 33 D A
68 D G 69 D A 70 D A 71 D G 117 D U 118 D C 124 D
A 151 D
10 1.78 1.94 185.2 -1.42 -0.50 19.6 87 20 6 12 13 1 4 0  U 55 B G 56 B A 62 B U 63 B C 41 L U 42 L G 43 L
11 0.78 1.73 190.9 -1.23 -0.32 17.4 76 13 13 7 13 9 7 0  A 62 B U 63 B U 64 B
12 1.28 1.34 195.5 -1.15 -0.42 17.3 80 18 8 9 13 5 4 0  U 55 B G 56 B A 62 B U 63 B C 41 L U 42 L G 43 L
13 1.60 1.95 207.9 -1.45 -0.59 16.9 86 15 12 15 6 3 2 0  A 30 D G 31 D U 33 D A 70 D A 71 D G 117 D U 118
D C 124 D C 163 D U 166 D U 168 D U 169 D U 170 D
U 171 D U 172 D U 173 D G 174 D G 175 D A 176 D
14 1.50 1.70 203.4 -0.57 -0.23 13.2 81 8 14 9 16 6 3 1  C 104 L G 1114 L G 1115 L A 1116 L G 1126 L A
1127 L C 1128 L U 1129 L
15 1.33 1.54 207.0 -1.21 -0.45 13.5 84 11 5 9 8 3 1 0  C 7 D U 8 D G 21 D C 23 D C 37 D A 38 D U 39 D U
47 D A 68 D G 69 D A 70 D A 71 D G 117 D U 118 D
A 138 D A 139 D A 151 D G 30 E G 31 E C 33 E A 34
E
16 1.37 1.40 250.6 -1.54 -0.43 19.0 78 25 6 9 11 7 4 0  IHP 3000 A U -6 B A -
5 B C 7 D U 8 D G 21 D C 23 D A 38 D U 39 D C 40
D A 41 D A 42 D G 43 D C 46 D U 47 D A 68 D G 69
D A 70 D A 71 D U 85 D G 86 D A 103 D G 104 D A
105 D C 107 D C 108 D A 109 D G 117 D U 118 D A
151 D
17 1.44 1.46 253.9 -1.15 -0.52 13.2 88 11 9 16 10 4 2 0  C 37 D A 38 D U 39 D U 47 D G 69 D A 70 D A 71 D
G 117 D U 118 D A 138 D A 139 D C 163 D U 166 D U
168 D U 169 D U 170 D U 171 D U 172 D U 173 D G
174 D G 175 D A 176 D G 30 E G 31 E C 33 E A 34 E
18 1.53 2.13 251.3 -1.81 -0.54 21.3 84 17 19 19 8 3 2 1  A 30 D G 31 D U 33 D A 70 D A 71 D G 117 D U 118
D C 124 D C 163 D
19 1.43 2.94 255.6 -1.74 -0.33 20.6 78 16 15 14 15 10 8 0  IHP 3000 A
20 1.47 1.50 266.3 -1.65 -0.46 21.0 82 21 15 13 14 4 2 0  A 1 D A 30 D G 31 D U 33 D A 70 D A 71 D G 117 D
U 118 D C 124 D U 160 D U 161 D
21 1.51 1.72 294.7 -1.67 -0.42 20.2 79 23 18 17 14 10 9 0  IHP 3000 A G -12 B U -11 B G -10 B U -8 B
22 1.52 2.41 302.7 -1.55 -0.53 18.1 79 20 14 9 9 10 0 0  G 5 B U 6 B G 30 E G 31 E U 32 E C 33 E A 34 E A
40 E A 41 E A 42 E C 43 E C 67 E C 68 E C 69 E A
82 E A 83 E C 84 E U 87 E U 88 E G 96 E A 97 E G
98 E A 99 E U 100 E U 101 E U 102 E A 103 E G 3 L
A 5 L U 6 L C 7 L U 8 L C 9 L U 17 L
23 1.46 1.78 297.5 -1.40 -0.48 17.2 82 25 10 16 13 8 5 0  IHP 3000 A U -6 B A -
5 B A 38 D U 39 D C 40 D A 41 D A 42 D G 43 D C
46 D U 47 D G 69 D A 70 D A 71 D U 85 D G 86 D A
103 D G 104 D A 105 D C 107 D C 108 D A 109 D G
117 D U 118 D C 163 D U 166 D U 168 D U 169 D U
170 D U 171 D U 172 D U 173 D G 174 D G 175 D A
176 D
24 1.53 1.72 302.0 -1.47 -0.47 18.1 84 19 16 17 16 9 2 0  A 62 B U 63 B U 65 B A 66 B C 67 B U 68 B A 69 B
A 70 B A 72 B A 73 B U 91 D U 92 D U 96 D U 57 E
C 58 E A 59 E G 60 E A 27 L U 33 L G 34 L C 109 L
25 1.43 1.46 297.3 -1.44 -0.47 17.1 86 13 16 20 12 4 2 1  C 37 D A 38 D U 39 D U 47 D G 69 D A 70 D A 71 D
G 117 D U 118 D A 138 D A 139 D C 163 D G 30 E G
31 E C 33 E A 34 E
26 1.21 2.73 312.3 -1.36 -0.38 17.6 84 17 12 16 18 5 2 0  A 1 D C 37 D A 38 D U 39 D U 47 D G 69 D A 70 D A
71 D G 117 D U 118 D A 138 D A 139 D U 160 D U
161 D G 30 E G 31 E C 33 E A 34 E
27 2.50 2.59 338.1 -1.24 -0.54 13.5 84 20 9 10 12 4 4 0  A 62 B U 63 B U 65 B A 66 B C 67 B U 68 B A 69 B
A 70 B A 72 B A 73 B C 7 D U 8 D G 21 D C 23 D A
38 D U 39 D C 40 D A 41 D A 42 D G 43 D C 46 D U
47 D A 68 D G 69 D A 70 D A 71 D C 90 D U 91 D U
96 D A 105 D A 106 D C 107 D C 108 D G 117 D U
118 D A 151 D U 57 E C 58 E A 59 E G 60 E A 27 L
U 33 L G 34 L C 109 L
28 1.68 1.97 364.3 -1.64 -0.40 20.4 79 21 17 16 14 8 4 1  U 55 B G 56 B C 57 B U 58 B C 48 E U 87 E U 88 E
G 96 E A 97 E G 98 E A 99 E U 100 E U 101 E U 102
E A 103 E G 3 L A 5 L U 6 L C 7 L U 8 L C 9 L U
17 L
29 1.61 1.61 371.3 -1.74 -0.43 22.1 80 23 20 16 14 5 4 1  U 55 B G 56 B C 57 B U 58 B C 48 E U 87 E U 88 E
G 96 E A 97 E G 98 E A 99 E U 100 E U 101 E U 102
E A 103 E G 3 L A 5 L U 6 L C 7 L U 8 L C 9 L U
17 L
30 1.67 1.95 383.3 -1.73 -0.42 21.8 83 24 16 16 18 4 2 1  A 62 B U 63 B C 48 E U 87 E U 88 E G 96 E A 97 E
G 98 E A 99 E U 100 E U 101 E U 102 E A 103 E G 3
L A 5 L U 6 L C 7 L U 8 L C 9 L U 17 L C 41 L U
42 L G 43 L C 109 L
31 1.52 1.53 45.6 0.56 0.07 4.4 86 1 1 2 7 0 3 0  
32 1.89 1.97 66.8 -1.41 -0.48 18.9 89 10 4 8 9 0 0 0  
33 2.14 2.64 83.4 -2.51 -0.62 24.9 88 13 5 12 2 1 1 0  
34 1.91 1.98 103.3 -0.18 -0.18 13.2 85 7 6 6 17 0 1 0  
35 1.51 1.52 123.6 0.59 -0.01 5.1 82 2 2 4 22 3 3 0  
36 1.52 1.51 136.9 -0.02 -0.14 7.1 79 4 2 7 15 5 3 0  
37 1.35 1.53 44.2 0.17 -0.16 11.4 86 3 5 4 11 0 0 0  
38 1.50 1.66 28.8 -0.36 0.04 15.7 77 3 2 2 4 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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