PDBsum entry 6iyf

Tunnel analysis for: 6iyf calculated with

MOLE 2.0

PDB id

6iyf

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.33

23.4

0.02

-0.05

9.8

84

1

2

2

3

2

0

0

2BA 401 B

2

1.33

1.33

26.2

-1.13

-0.32

11.7

83

3

2

2

3

2

1

0

2BA 401 B

3

1.32

1.32

31.9

-1.42

-0.26

14.9

83

3

2

3

2

3

1

0

2BA 401 B

4

1.34

1.35

39.6

-1.51

-0.26

15.8

84

2

4

3

3

5

1

0

2BA 401 B

5

1.14

2.32

18.3

1.44

0.49

6.0

68

1

1

2

6

2

0

1

6

1.27

1.77

22.1

-1.19

-0.62

17.6

70

1

2

1

2

0

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.